South Africa has implemented its annual payroll amendments for the 2026/2027 tax year, following updates announced in the February 2026 National Budget. These changes go beyond income tax brackets to affect medical scheme credits, travel allowances, fringe benefits and other payroll-related items. All amendments are effective from 1 March 2026 and are now live in payroll systems across the country, impacting employee net pay and employer compliance obligations.

Scope Of the Amendments

The annual amendments provide updated values for key payroll items, ensuring organisations comply with the latest guidance. They apply to the 2026/2027 tax year and are relevant for all employers managing PAYE, fringe benefits, and reimbursed allowances. These updates are designed to reflect inflation, streamline payroll processes, and maintain accuracy in employee remuneration reporting.

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Key Changes: Updated Personal Income Tax Brackets and Rebates

The 2026/2027 tax year brings several inflation-adjusted updates to personal income tax that employers must factor into payroll calculations. These adjustments aim to reduce bracket creep and ensure employees are taxed fairly under the new thresholds:

  • Revised primary, secondary and tertiary rebates
  • Updated thresholds to prevent employees from unintentionally moving into higher tax brackets due to salary increases
  • Changes effective from 1 March 2026, applied across payroll systems 

Medical Scheme Fees Tax Credits

Medical scheme tax credits have been revised, impacting the net pay of employees who are members of approved schemes. Payroll teams should ensure the correct credits are applied for the new tax year:

  • R376 per month for an individual member
  • R752 per month for a member and one dependant
  • R254 per month for each additional dependant 

These updated credits must be applied in payroll calculations from the start of the tax year to ensure employees receive the correct benefits.

Reimburse Travel Allowance

The prescribed rate for reimbursed business travel has increased, affecting how employers calculate allowances and deductions. Payroll teams need to account for these changes immediately:

  • The new rate is R4.95 per kilometre
  • Payments above this rate are treated as taxable remuneration
  • Payroll systems must adjust calculations to reflect the updated allowable reimbursement 

Fringe Benefit — Free or Cheap Accommodation

Fringe benefits for free or subsidised employee accommodation have also been updated. Employers should apply the new abatement value to ensure PAYE compliance and accurate reporting:

  • The accommodation fringe benefit abatement is now R99 000 for the 2026/2027 tax year
  • This value should be applied from the start of the tax year, even though final legislation is still pending 

Operational Considerations

Payroll teams and system administrators must ensure all amendments are reflected in their processes to maintain compliance and accuracy. This includes reviewing payroll tax tables, recalculating PAYE deductions, and verifying fringe benefit valuations. Clear communication with employees about any impact on net pay is also recommended to prevent confusion.

Looking Ahead

These annual amendments form part of South Africa’s routine post-Budget update cycle. Employers should stay alert for any further legislative updates or notices that may affect payroll processing throughout the 2026/2027 tax year. Incorporating these changes promptly ensures organisations remain compliant and employees are correctly remunerated.

South Africa – Global Insights

For further detailed guidance on payroll, employment taxation and compliance in South Africa, including the impact of the 2026/2027 annual amendments, visit our South Africa Global Insights on the activpayroll website.

Next Steps

For support implementing these payroll amendments or understanding how they affect your workforce, complete our Contact Us form and a member of our expert team will provide personalised guidance.

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